IL_3J71_075

3D structure

PDB id

3J71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

3J71|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J71_075 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1892

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3J71|1|5|C|2867
3J71|1|5|G|2868
3J71|1|5|U|2869
3J71|1|5|A|2870
3J71|1|5|A|2871
3J71|1|5|C|2872
*
3J71|1|5|G|2877
3J71|1|5|G|2878
3J71|1|5|A|2879
3J71|1|5|U|2880
3J71|1|5|A|2881
3J71|1|5|A|2882
3J71|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain p

Ribosomal protein eL43