Loop IL_3J71

3D structure

PDB id: 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the mammalian 60S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CGGGGUUUCGUACGUAGCAGAG*CGAUCUAUUGAAAGUCAGCCCUCG
Length: 46 nucleotides
Bulged bases: 3J71|1|5|U|5006, 3J71|1|5|C|5013, 3J71|1|5|A|5016, 3J71|1|5|G|5041, 3J71|1|5|G|5049, 3J71|1|5|C|5054
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J71|1|5|C|4996
3J71|1|5|G|4997
3J71|1|5|G|4998
3J71|1|5|G|4999
3J71|1|5|G|5000
3J71|1|5|U|5001
3J71|1|5|U|5002
3J71|1|5|U|5003
3J71|1|5|C|5004
3J71|1|5|G|5005
3J71|1|5|U|5006
3J71|1|5|A|5007
3J71|1|5|C|5008
3J71|1|5|G|5009
3J71|1|5|U|5010
3J71|1|5|A|5011
3J71|1|5|G|5012
3J71|1|5|C|5013
3J71|1|5|A|5014
3J71|1|5|G|5015
3J71|1|5|A|5016
3J71|1|5|G|5017
*
3J71|1|5|C|5032
3J71|1|5|G|5033
3J71|1|5|A|5034
3J71|1|5|U|5035
3J71|1|5|C|5036
3J71|1|5|U|5037
3J71|1|5|A|5038
3J71|1|5|U|5039
3J71|1|5|U|5040
3J71|1|5|G|5041
3J71|1|5|A|5042
3J71|1|5|A|5043
3J71|1|5|A|5044
3J71|1|5|G|5045
3J71|1|5|U|5046
3J71|1|5|C|5047
3J71|1|5|A|5048
3J71|1|5|G|5049
3J71|1|5|C|5050
3J71|1|5|C|5051
3J71|1|5|C|5052
3J71|1|5|U|5053
3J71|1|5|C|5054
3J71|1|5|G|5055

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain B: Ribosomal protein uL3
Chain R: Ribosomal protein eL19
Chain U: Ribosomal protein eL22
Chain W: Ribosomal protein eL24
Chain d: Ribosomal protein eL31

IL_3J71_149