IL_3J72_006

3D structure

PDB id

3J72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCCCGC*GCGCGGGA

Length

15 nucleotides

Bulged bases

3J72|1|5|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J72|1|5|U|122
3J72|1|5|C|123
3J72|1|5|C|124
3J72|1|5|C|125
3J72|1|5|C|126
3J72|1|5|G|127
3J72|1|5|C|128
*
3J72|1|5|G|140
3J72|1|5|C|141
3J72|1|5|G|142
3J72|1|5|C|143
3J72|1|5|G|144
3J72|1|5|G|145
3J72|1|5|G|146
3J72|1|5|A|147

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

Ribosomal protein eL8

Chain N

Ribosomal protein eL15

Chain X

Ribosomal protein uL23

Chain h

Ribosomal protein uL29