IL_3J72_134

3D structure

PDB id

3J72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGG*CAC

Length

36 nucleotides

Bulged bases

3J72|1|5|A|1983, 3J72|1|5|A|1991, 3J72|1|5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J72|1|5|G|1969
3J72|1|5|A|1970
3J72|1|5|C|1971
3J72|1|5|G|1972
3J72|1|5|G|1973
3J72|1|5|U|1974
3J72|1|5|G|1975
3J72|1|5|G|1976
3J72|1|5|C|1977
3J72|1|5|C|1978
3J72|1|5|A|1979
3J72|1|5|U|1980
3J72|1|5|G|1981
3J72|1|5|G|1982
3J72|1|5|A|1983
3J72|1|5|A|1984
3J72|1|5|G|1985
3J72|1|5|U|1986
3J72|1|5|C|1987
3J72|1|5|G|1988
3J72|1|5|G|1989
3J72|1|5|A|1990
3J72|1|5|A|1991
3J72|1|5|U|1992
3J72|1|5|C|1993
3J72|1|5|C|1994
3J72|1|5|G|1995
3J72|1|5|C|1996
3J72|1|5|U|1997
3J72|1|5|A|1998
3J72|1|5|A|1999
3J72|1|5|G|2000
3J72|1|5|G|2001
*
3J72|1|5|C|2016
3J72|1|5|A|2017
3J72|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein uL16