IL_3J72_142

3D structure

PDB id

3J72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3J72|1|5|A|3746, 3J72|1|5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J72_142 not in the Motif Atlas

Geometric match to IL_8CRE_090

Geometric discrepancy: 0.1931

The information below is about IL_8CRE_090

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

3J72|1|5|U|3704
3J72|1|5|G|3705
*
3J72|1|5|U|3745
3J72|1|5|A|3746
3J72|1|5|A|3747
3J72|1|5|A|3748

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL12