3D structure

PDB id
3J7A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUCC*GGAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary: AUCC,GGAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J7A_030 not in the Motif Atlas
Geometric match to IL_4WF9_109
Geometric discrepancy: 0.2387
The information below is about IL_4WF9_109
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

3J7A|1|A|A|757
3J7A|1|A|U|758
3J7A|1|A|C|759
3J7A|1|A|C|760
*
3J7A|1|A|G|786
3J7A|1|A|G|787
3J7A|1|A|A|788
3J7A|1|A|U|789

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain J
40S ribosomal protein eS7

Coloring options:


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