IL_3J7A_030

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUCC*GGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUCC,GGAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7A_030 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2387

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3J7A|1|A|A|757
3J7A|1|A|U|758
3J7A|1|A|C|759
3J7A|1|A|C|760
*
3J7A|1|A|G|786
3J7A|1|A|G|787
3J7A|1|A|A|788
3J7A|1|A|U|789

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein eS7