IL_3J7A_048

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

3J7A|1|A|C|1197, 3J7A|1|A|U|1199, 3J7A|1|A|G|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50989.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

3J7A|1|A|C|1103
3J7A|1|A|G|1104
3J7A|1|A|A|1105
*
3J7A|1|A|U|1196
3J7A|1|A|C|1197
3J7A|1|A|U|1198
3J7A|1|A|U|1199
3J7A|1|A|U|1200
3J7A|1|A|G|1201
3J7A|1|A|G|1202

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein uS5

Chain K

40S ribosomal protein uS8

Chain Q

40S ribosomal protein uS12

Chain U

40S ribosomal protein uS15

Chain V

40S ribosomal protein uS17