IL_3J7A_061

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGCU*AGAGG

Length

11 nucleotides

Bulged bases

3J7A|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

3J7A|1|A|C|1440
3J7A|1|A|C|1441
3J7A|1|A|U|1442
3J7A|1|A|G|1443
3J7A|1|A|C|1444
3J7A|1|A|U|1445
*
3J7A|1|A|A|1628
3J7A|1|A|G|1629
3J7A|1|A|A|1630
3J7A|1|A|G|1631
3J7A|1|A|G|1632

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein uS9

Chain N

40S ribosomal protein uS10

Chain W

40S ribosomal protein eS17