IL_3J7A_068

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAUA*UUGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85140.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3J7A|1|A|G|1837
3J7A|1|A|G|1838
3J7A|1|A|G|1839
3J7A|1|A|A|1840
3J7A|1|A|U|1841
3J7A|1|A|A|1842
*
3J7A|1|A|U|1863
3J7A|1|A|U|1864
3J7A|1|A|G|1865
3J7A|1|A|A|1866
3J7A|1|A|A|1867
3J7A|1|A|C|1868

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS13

Chain Y

40S ribosomal protein eS19