IL_3J7A_069

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUU,AAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7A_069 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2704

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J7A|1|A|A|1844
3J7A|1|A|U|1845
3J7A|1|A|U|1846
*
3J7A|1|A|A|1859
3J7A|1|A|A|1860
3J7A|1|A|U|1861

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS13

Chain X

40S ribosomal protein uS19

Chain Y

40S ribosomal protein eS19