IL_3J7Q_002

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

3J7Q|1|5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_002 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.2111

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J7Q|1|5|A|12
3J7Q|1|5|U|13
3J7Q|1|5|C|14
*
3J7Q|1|8|G|143
3J7Q|1|8|U|144

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eL8

Chain N

Ribosomal protein eL15

Chain X

Ribosomal protein uL23