3D structure

PDB id
3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the idle mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
3J7Q|1|5|U|1591
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J7Q_052 not in the Motif Atlas
Homologous match to IL_8C3A_035
Geometric discrepancy: 0.235
The information below is about IL_8C3A_035
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

3J7Q|1|5|C|1590
3J7Q|1|5|U|1591
3J7Q|1|5|G|1592
*
3J7Q|1|5|C|1603
3J7Q|1|5|G|1604

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain j
Ribosomal protein eL37

Coloring options:


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