IL_3J7Q_059

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_059 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1858

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

3J7Q|1|5|A|1746
3J7Q|1|5|U|1747
3J7Q|1|5|U|1748
3J7Q|1|5|A|1749
*
3J7Q|1|5|U|1781
3J7Q|1|5|U|1782
3J7Q|1|5|C|1783
3J7Q|1|5|U|1784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal protein uL18

Chain I

Ribosomal protein uL16