IL_3J7Q_159
3D structure
- PDB id
- 3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCCCG*CGCGGG
- Length
- 11 nucleotides
- Bulged bases
- 3J7Q|1|5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7Q_159 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.3508
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3J7Q|1|5|C|123
3J7Q|1|5|C|124
3J7Q|1|5|C|125
3J7Q|1|5|C|126
3J7Q|1|5|G|127
*
3J7Q|1|5|C|141
3J7Q|1|5|G|142
3J7Q|1|5|C|143
3J7Q|1|5|G|144
3J7Q|1|5|G|145
3J7Q|1|5|G|146
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- Ribosomal protein eL8
- Chain N
- Ribosomal protein eL15
- Chain X
- Ribosomal protein uL23
- Chain h
- Ribosomal protein uL29
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