3D structure

PDB id
3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the idle mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGGGGUUUCGUACGU*AUUGAAAGUCAGCCCUCG
Length
33 nucleotides
Bulged bases
3J7Q|1|5|G|5041, 3J7Q|1|5|G|5049, 3J7Q|1|5|C|5054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7Q|1|5|C|4996
3J7Q|1|5|G|4997
3J7Q|1|5|G|4998
3J7Q|1|5|G|4999
3J7Q|1|5|G|5000
3J7Q|1|5|U|5001
3J7Q|1|5|U|5002
3J7Q|1|5|U|5003
3J7Q|1|5|C|5004
3J7Q|1|5|G|5005
3J7Q|1|5|U|5006
3J7Q|1|5|A|5007
3J7Q|1|5|C|5008
3J7Q|1|5|G|5009
3J7Q|1|5|U|5010
*
3J7Q|1|5|A|5038
3J7Q|1|5|U|5039
3J7Q|1|5|U|5040
3J7Q|1|5|G|5041
3J7Q|1|5|A|5042
3J7Q|1|5|A|5043
3J7Q|1|5|A|5044
3J7Q|1|5|G|5045
3J7Q|1|5|U|5046
3J7Q|1|5|C|5047
3J7Q|1|5|A|5048
3J7Q|1|5|G|5049
3J7Q|1|5|C|5050
3J7Q|1|5|C|5051
3J7Q|1|5|C|5052
3J7Q|1|5|U|5053
3J7Q|1|5|C|5054
3J7Q|1|5|G|5055

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain W
Ribosomal protein eL24
Chain d
Ribosomal protein eL31

Coloring options:

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