IL_3J7R_067

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

3J7R|1|5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_067 not in the Motif Atlas

Homologous match to IL_8GLP_077

Geometric discrepancy: 0.1786

The information below is about IL_8GLP_077

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

3J7R|1|5|U|1918
3J7R|1|5|G|1919
3J7R|1|5|C|1920
*
3J7R|1|5|G|2063
3J7R|1|5|G|2064

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uL30

Chain M

Ribosomal protein eL14

Chain O

Ribosomal protein uL13

Chain S

Ribosomal protein eL20

Chain f

Ribosomal protein eL33