IL_3J7R_074

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

3J7R|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_074 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1644

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

3J7R|1|5|G|2001
3J7R|1|5|A|2002
3J7R|1|5|G|2003
3J7R|1|5|U|2004
3J7R|1|5|G|2005
*
3J7R|1|5|C|2014
3J7R|1|5|U|2015
3J7R|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains