IL_3J7R_128

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_128 not in the Motif Atlas

Geometric match to IL_4V9F_086

Geometric discrepancy: 0.1421

The information below is about IL_4V9F_086

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

3J7R|1|5|C|4453
3J7R|1|5|G|4454
*
3J7R|1|5|U|4526
3J7R|1|5|G|4527
3J7R|1|5|G|4528

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain S5

Transfer RNA; tRNA