IL_3J7R_173

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_173 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3672

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J7R|1|S2|C|188
3J7R|1|S2|U|189
3J7R|1|S2|G|190
3J7R|1|S2|A|191
3J7R|1|S2|C|192
*
3J7R|1|S2|G|207
3J7R|1|S2|G|208
3J7R|1|S2|A|209
3J7R|1|S2|U|210
3J7R|1|S2|G|211

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

Ribosomal protein eS8