IL_3J7R_189

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGUGCCAG*CGGUAAUUCCA

Length

20 nucleotides

Bulged bases

3J7R|1|S2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7R|1|S2|U|609
3J7R|1|S2|G|610
3J7R|1|S2|G|611
3J7R|1|S2|U|612
3J7R|1|S2|G|613
3J7R|1|S2|C|614
3J7R|1|S2|C|615
3J7R|1|S2|A|616
3J7R|1|S2|G|617
*
3J7R|1|S2|C|624
3J7R|1|S2|G|625
3J7R|1|S2|G|626
3J7R|1|S2|U|627
3J7R|1|S2|A|628
3J7R|1|S2|A|629
3J7R|1|S2|U|630
3J7R|1|S2|U|631
3J7R|1|S2|C|632
3J7R|1|S2|C|633
3J7R|1|S2|A|634

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S4

Messenger RNA

Chain S5

Transfer RNA; tRNA

Chain SD

Ribosomal protein uS3

Chain SX

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30