IL_3J7R_201

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

3J7R|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_201 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.2073

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3J7R|1|S2|G|924
3J7R|1|S2|G|925
3J7R|1|S2|A|926
3J7R|1|S2|C|927
*
3J7R|1|S2|G|1014
3J7R|1|S2|U|1015
3J7R|1|S2|U|1016
3J7R|1|S2|U|1017
3J7R|1|S2|U|1018

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SN

Ribosomal protein uS15

Chain Sb

Ribosomal protein eS27