IL_3J7R_221
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 3J7R|1|S2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7R_221 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.3864
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J7R|1|S2|C|1395
3J7R|1|S2|A|1396
3J7R|1|S2|U|1397
3J7R|1|S2|G|1398
3J7R|1|S2|C|1399
*
3J7R|1|S2|G|1447
3J7R|1|S2|A|1448
3J7R|1|S2|G|1449
3J7R|1|S2|G|1450
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SD
- Ribosomal protein uS3
- Chain SQ
- Ribosomal protein uS9
- Chain SR
- Ribosomal protein eS17
- Chain SU
- Ribosomal protein uS10
- Chain Sg
- Ribosomal protein RACK1
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