IL_3J7R_224

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCCC*GGCG

Length

9 nucleotides

Bulged bases

3J7R|1|S2|C|1418

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_224 not in the Motif Atlas

Geometric match to IL_6GYV_002

Geometric discrepancy: 0.3973

The information below is about IL_6GYV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

3J7R|1|S2|C|1415
3J7R|1|S2|C|1416
3J7R|1|S2|C|1417
3J7R|1|S2|C|1418
3J7R|1|S2|C|1419
*
3J7R|1|S2|G|1428
3J7R|1|S2|G|1429
3J7R|1|S2|C|1430
3J7R|1|S2|G|1431

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain ST

Ribosomal protein eS19