IL_3J7Z_032

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Z_032 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.1824

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J7Z|1|A|G|875
3J7Z|1|A|C|876
3J7Z|1|A|A|877
3J7Z|1|A|A|878
3J7Z|1|A|G|879
*
3J7Z|1|A|C|898
3J7Z|1|A|A|899
3J7Z|1|A|A|900
3J7Z|1|A|C|901
3J7Z|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16