IL_3J7Z_038

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

3J7Z|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Z_038 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1373

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3J7Z|1|A|U|1018
3J7Z|1|A|U|1019
3J7Z|1|A|A|1020
3J7Z|1|A|A|1021
3J7Z|1|A|G|1022
3J7Z|1|A|U|1023
3J7Z|1|A|G|1024
*
3J7Z|1|A|C|1140
3J7Z|1|A|U|1141
3J7Z|1|A|A|1142
3J7Z|1|A|A|1143
3J7Z|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13