IL_3J7Z_044

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

3J7Z|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Z_044 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.1807

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

3J7Z|1|A|G|1087
3J7Z|1|A|A|1088
3J7Z|1|A|A|1089
3J7Z|1|A|A|1090
*
3J7Z|1|A|U|1101
3J7Z|1|A|C|1102

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain I

50S ribosomal protein L11