IL_3J81_003

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCUCAAA*UGACAAUA

Length

15 nucleotides

Bulged bases

3J81|1|2|A|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|U|35
3J81|1|2|C|36
3J81|1|2|U|37
3J81|1|2|C|38
3J81|1|2|A|39
3J81|1|2|A|40
3J81|1|2|A|41
*
3J81|1|2|U|465
3J81|1|2|G|466
3J81|1|2|A|467
3J81|1|2|C|468
3J81|1|2|A|469
3J81|1|2|A|470
3J81|1|2|U|471
3J81|1|2|A|472

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24