IL_3J81_010

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_010 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.1929

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

3J81|1|2|U|117
3J81|1|2|U|118
3J81|1|2|A|119
3J81|1|2|U|120
3J81|1|2|U|121
3J81|1|2|U|122
*
3J81|1|2|A|294
3J81|1|2|U|295
3J81|1|2|U|296
3J81|1|2|C|297
3J81|1|2|A|298

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8