IL_3J81_012

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAUCU*AGCUAAUA

Length

13 nucleotides

Bulged bases

3J81|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|U|145
3J81|1|2|A|146
3J81|1|2|U|147
3J81|1|2|C|148
3J81|1|2|U|149
*
3J81|1|2|A|163
3J81|1|2|G|164
3J81|1|2|C|165
3J81|1|2|U|166
3J81|1|2|A|167
3J81|1|2|A|168
3J81|1|2|U|169
3J81|1|2|A|170

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain Y

eS24