IL_3J81_037

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCCGGUC*GGUUUUUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|G|650
3J81|1|2|U|651
3J81|1|2|C|652
3J81|1|2|C|653
3J81|1|2|G|654
3J81|1|2|G|655
3J81|1|2|U|656
3J81|1|2|C|657
*
3J81|1|2|G|676
3J81|1|2|G|677
3J81|1|2|U|678
3J81|1|2|U|679
3J81|1|2|U|680
3J81|1|2|U|681
3J81|1|2|U|682
3J81|1|2|C|683

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4