IL_3J81_043

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_043 not in the Motif Atlas

Homologous match to IL_8P9A_468

Geometric discrepancy: 0.4179

The information below is about IL_8P9A_468

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|G|823
3J81|1|2|U|824
3J81|1|2|U|825
3J81|1|2|C|826
*
3J81|1|2|G|844
3J81|1|2|G|845
3J81|1|2|A|846
3J81|1|2|C|847

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17