IL_3J81_055
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 3J81|1|2|U|1051
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_055 not in the Motif Atlas
- Geometric match to IL_5TBW_093
- Geometric discrepancy: 0.3246
- The information below is about IL_5TBW_093
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
3J81|1|2|G|1050
3J81|1|2|U|1051
3J81|1|2|G|1052
*
3J81|1|2|C|1065
3J81|1|2|C|1066
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- uS2
- Chain B
- eS1
- Chain R
- eS17
- Chain b
- eS27
Coloring options: