IL_3J81_072

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUAGG*UCUUCU

Length

12 nucleotides

Bulged bases

3J81|1|2|A|1345, 3J81|1|2|U|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|1344
3J81|1|2|A|1345
3J81|1|2|U|1346
3J81|1|2|A|1347
3J81|1|2|G|1348
3J81|1|2|G|1349
*
3J81|1|2|U|1373
3J81|1|2|C|1374
3J81|1|2|U|1375
3J81|1|2|U|1376
3J81|1|2|C|1377
3J81|1|2|U|1378

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain Q

uS9

Chain T

eS19

Chain U

uS10