IL_3J81_080

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_080 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1598

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J81|1|2|G|1538
3J81|1|2|G|1539
3J81|1|2|G|1540
3J81|1|2|A|1541
3J81|1|2|U|1542
3J81|1|2|A|1543
*
3J81|1|2|U|1564
3J81|1|2|U|1565
3J81|1|2|C|1566
3J81|1|2|A|1567
3J81|1|2|A|1568
3J81|1|2|C|1569

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

uS13

Chain T

eS19