IL_3J81_087

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUUGAAUG*CAUUUAGAG

Length

19 nucleotides

Bulged bases

3J81|1|2|U|1655

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|C|1651
3J81|1|2|G|1652
3J81|1|2|A|1653
3J81|1|2|U|1654
3J81|1|2|U|1655
3J81|1|2|G|1656
3J81|1|2|A|1657
3J81|1|2|A|1658
3J81|1|2|U|1659
3J81|1|2|G|1660
*
3J81|1|2|C|1737
3J81|1|2|A|1738
3J81|1|2|U|1739
3J81|1|2|U|1740
3J81|1|2|U|1741
3J81|1|2|A|1742
3J81|1|2|G|1743
3J81|1|2|A|1744
3J81|1|2|G|1745

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

uS12

Chain h

eL41