IL_3J81_099

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGGGCAAG*CUCC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|G|547
3J81|1|2|G|548
3J81|1|2|A|549
3J81|1|2|G|550
3J81|1|2|G|551
3J81|1|2|G|552
3J81|1|2|C|553
3J81|1|2|A|554
3J81|1|2|A|555
3J81|1|2|G|556
*
3J81|1|2|C|586
3J81|1|2|U|587
3J81|1|2|C|588
3J81|1|2|C|589

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

mRNA

Chain C

uS5

Chain J

uS4

Chain X

uS12

Chain e

eS30