IL_3J81_101

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUAACCUGUACU*GUGCAGGCGAAC

Length

25 nucleotides

Bulged bases

3J81|1|2|U|705, 3J81|1|2|G|732, 3J81|1|2|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|G|703
3J81|1|2|C|704
3J81|1|2|U|705
3J81|1|2|A|706
3J81|1|2|A|707
3J81|1|2|C|708
3J81|1|2|C|709
3J81|1|2|U|710
3J81|1|2|G|711
3J81|1|2|U|712
3J81|1|2|A|713
3J81|1|2|C|714
3J81|1|2|U|715
*
3J81|1|2|G|724
3J81|1|2|U|725
3J81|1|2|G|726
3J81|1|2|C|727
3J81|1|2|A|728
3J81|1|2|G|729
3J81|1|2|G|730
3J81|1|2|C|731
3J81|1|2|G|732
3J81|1|2|A|733
3J81|1|2|A|734
3J81|1|2|C|735

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6