IL_3J81_103
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGGUUC*GGACCA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J81_103 not in the Motif Atlas
- Geometric match to IL_3D0M_003
- Geometric discrepancy: 0.3478
- The information below is about IL_3D0M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02014.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWH-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J81|1|2|U|821
3J81|1|2|G|822
3J81|1|2|G|823
3J81|1|2|U|824
3J81|1|2|U|825
3J81|1|2|C|826
*
3J81|1|2|G|844
3J81|1|2|G|845
3J81|1|2|A|846
3J81|1|2|C|847
3J81|1|2|C|848
3J81|1|2|A|849
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- uS17
Coloring options: