IL_3J81_105

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGGGAUCGAAG*CGUAGUCUU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|982
3J81|1|2|G|983
3J81|1|2|G|984
3J81|1|2|G|985
3J81|1|2|G|986
3J81|1|2|A|987
3J81|1|2|U|988
3J81|1|2|C|989
3J81|1|2|G|990
3J81|1|2|A|991
3J81|1|2|A|992
3J81|1|2|G|993
*
3J81|1|2|C|1009
3J81|1|2|G|1010
3J81|1|2|U|1011
3J81|1|2|A|1012
3J81|1|2|G|1013
3J81|1|2|U|1014
3J81|1|2|C|1015
3J81|1|2|U|1016
3J81|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

uS15

Chain O

uS11

Chain a

eS26

Chain m

eIF1