IL_3J81_111

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGCCAGCGA*UUGUGAAACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|A|1477
3J81|1|2|G|1478
3J81|1|2|C|1479
3J81|1|2|C|1480
3J81|1|2|A|1481
3J81|1|2|G|1482
3J81|1|2|C|1483
3J81|1|2|G|1484
3J81|1|2|A|1485
*
3J81|1|2|U|1517
3J81|1|2|U|1518
3J81|1|2|G|1519
3J81|1|2|U|1520
3J81|1|2|G|1521
3J81|1|2|A|1522
3J81|1|2|A|1523
3J81|1|2|A|1524
3J81|1|2|C|1525
3J81|1|2|U|1526

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain F

uS7

Chain Q

uS9

Chain T

eS19

Chain U

uS10

Chain Z

eS25

Chain d

uS14