IL_3J81_119

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

3J81|1|2|A|1345, 3J81|1|2|U|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J81_119 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.2587

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.3

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

4

Unit IDs

3J81|1|2|A|1344
3J81|1|2|A|1345
3J81|1|2|U|1346
3J81|1|2|A|1347
*
3J81|1|2|U|1375
3J81|1|2|U|1376
3J81|1|2|C|1377
3J81|1|2|U|1378

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain Q

uS9

Chain U

uS10