IL_3J9Y_008

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_008 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.2474

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3J9Y|1|A|C|269
3J9Y|1|A|A|270
3J9Y|1|A|G|271
*
3J9Y|1|A|C|366
3J9Y|1|A|G|367
3J9Y|1|A|A|368
3J9Y|1|A|U|369
3J9Y|1|A|G|370

Current chains

Chain A

23S ribosomal RNA

Nearby chains