IL_3J9Y_036

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

3J9Y|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_036 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1742

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3J9Y|1|A|U|1018
3J9Y|1|A|U|1019
3J9Y|1|A|A|1020
3J9Y|1|A|A|1021
3J9Y|1|A|G|1022
3J9Y|1|A|U|1023
3J9Y|1|A|G|1024
*
3J9Y|1|A|C|1140
3J9Y|1|A|U|1141
3J9Y|1|A|A|1142
3J9Y|1|A|A|1143
3J9Y|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13