IL_3J9Y_041
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAG*CAC
- Length
- 36 nucleotides
- Bulged bases
- 3J9Y|1|A|U|1061, 3J9Y|1|A|U|1066, 3J9Y|1|A|A|1070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J9Y|1|A|G|1055
3J9Y|1|A|G|1056
3J9Y|1|A|A|1057
3J9Y|1|A|U|1058
3J9Y|1|A|G|1059
3J9Y|1|A|U|1060
3J9Y|1|A|U|1061
3J9Y|1|A|G|1062
3J9Y|1|A|G|1063
3J9Y|1|A|C|1064
3J9Y|1|A|U|1065
3J9Y|1|A|U|1066
3J9Y|1|A|A|1067
3J9Y|1|A|G|1068
3J9Y|1|A|A|1069
3J9Y|1|A|A|1070
3J9Y|1|A|G|1071
3J9Y|1|A|C|1072
3J9Y|1|A|A|1073
3J9Y|1|A|G|1074
3J9Y|1|A|C|1075
3J9Y|1|A|C|1076
3J9Y|1|A|A|1077
3J9Y|1|A|U|1078
3J9Y|1|A|C|1079
3J9Y|1|A|A|1080
3J9Y|1|A|U|1081
3J9Y|1|A|U|1082
3J9Y|1|A|U|1083
3J9Y|1|A|A|1084
3J9Y|1|A|A|1085
3J9Y|1|A|A|1086
3J9Y|1|A|G|1087
*
3J9Y|1|A|C|1102
3J9Y|1|A|A|1103
3J9Y|1|A|C|1104
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain 5
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
- Chain w
- Tetracycline resistance protein TetM
Coloring options: