IL_3J9Y_065

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

3J9Y|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_065 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1226

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J9Y|1|A|U|1712
3J9Y|1|A|A|1713
3J9Y|1|A|U|1714
3J9Y|1|A|G|1715
3J9Y|1|A|U|1716
3J9Y|1|A|A|1717
3J9Y|1|A|G|1718
*
3J9Y|1|A|U|1742
3J9Y|1|A|G|1743
3J9Y|1|A|A|1744
3J9Y|1|A|A|1745
3J9Y|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains