IL_3J9Y_073

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_073 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.138

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

3J9Y|1|A|U|1864
3J9Y|1|A|U|1865
3J9Y|1|A|A|1866
3J9Y|1|A|G|1867
*
3J9Y|1|A|C|1874
3J9Y|1|A|G|1875
3J9Y|1|A|A|1876
3J9Y|1|A|A|1877
3J9Y|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains