IL_3J9Y_081

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

3J9Y|1|A|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_081 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.0748

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3J9Y|1|A|U|2081
3J9Y|1|A|A|2082
3J9Y|1|A|G|2083
*
3J9Y|1|A|U|2236
3J9Y|1|A|G|2237
3J9Y|1|A|G|2238
3J9Y|1|A|G|2239

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28