IL_3J9Y_084

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAUGUGUAGGAUAG*CCUUUAA

Length

23 nucleotides

Bulged bases

3J9Y|1|A|U|2111, 3J9Y|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|A|U|2105
3J9Y|1|A|U|2106
3J9Y|1|A|G|2107
3J9Y|1|A|A|2108
3J9Y|1|A|U|2109
3J9Y|1|A|G|2110
3J9Y|1|A|U|2111
3J9Y|1|A|G|2112
3J9Y|1|A|U|2113
3J9Y|1|A|A|2114
3J9Y|1|A|G|2115
3J9Y|1|A|G|2116
3J9Y|1|A|A|2117
3J9Y|1|A|U|2118
3J9Y|1|A|A|2119
3J9Y|1|A|G|2120
*
3J9Y|1|A|C|2178
3J9Y|1|A|C|2179
3J9Y|1|A|U|2180
3J9Y|1|A|U|2181
3J9Y|1|A|U|2182
3J9Y|1|A|A|2183
3J9Y|1|A|A|2184

Current chains

Chain A

23S ribosomal RNA

Nearby chains