IL_3J9Y_085
3D structure
- PDB id
- 3J9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUG*UG
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- 2203U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J9Y_085 not in the Motif Atlas
- Homologous match to IL_5J7L_331
- Geometric discrepancy: 0.1368
- The information below is about IL_5J7L_331
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.17
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
3J9Y|1|A|U|2202
3J9Y|1|A|U|2203
3J9Y|1|A|G|2204
*
3J9Y|1|A|U|2220
3J9Y|1|A|G|2221
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L9
- Chain X
- 50S ribosomal protein L28
Coloring options: