IL_3J9Y_085

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases (A, C, G, U)

2203U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_085 not in the Motif Atlas

Homologous match to IL_5J7L_331

Geometric discrepancy: 0.1368

The information below is about IL_5J7L_331

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.17

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J9Y|1|A|U|2202
3J9Y|1|A|U|2203
3J9Y|1|A|G|2204
*
3J9Y|1|A|U|2220
3J9Y|1|A|G|2221

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28