IL_3J9Y_107

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J9Y_107 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1052

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

3J9Y|1|A|U|2847
3J9Y|1|A|G|2848
3J9Y|1|A|U|2849
3J9Y|1|A|A|2850
3J9Y|1|A|A|2851
3J9Y|1|A|G|2852
*
3J9Y|1|A|U|2865
3J9Y|1|A|U|2866
3J9Y|1|A|G|2867
3J9Y|1|A|A|2868
3J9Y|1|A|G|2869

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19